Journal Articles
Improvements on bicriteria pairwise sequence alignment: algorithms and applications
M. Abbasi, L. Paquete, A. Liefooghe, M. Pinheiro, P. Matias 
Bioinformatics, 29(8):996-1003, 2013. 
Support material is available here.


Abstracts
Algorithms and applications of biobjective pairwise sequence alignment
L. Paquete, M. Abbasi, M. Pinheiro, P. Matias
The 2012 Mini EURO Conference on Computational Biology, Bioinformatics and Medicine (EURO-CBBM 2012), 2012.

Algorithms for multiobjective sequence alignment
L. Paquete, M. Abbasi, M. Pinheiro, P. Matias
2nd Workshop on Bio-Optimization, 2012.

Posters
Dynamic programming algorithms for biobjective sequence alignment
M. Abbasi, L. Paquete, M. Pinheiro
Proc. of Bioinformatics Open Days, 40, 2012.

Multiobjective sequence alignment: Formulation and algorithms
M. Abbasi, L. Paquete, A. Liefooghe, M.C. Dias
Proc. of the 19th International Conference on Intelligent Systems for Molecular Biology and 
10th European Conference on Computational Biology (ISMB/ECCB 2011), 2011.